Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs1938642 chr11:58059957 T/C 2.13E-5 108 17.23 12.2 4.58 KM Plot
LAML rs1970960 chr1:203539685 C/T 0.000139 109 16.17 16.23 4.1 KM Plot
LAML rs200161277 chr16:71740172 C/CTATGT 0.000153 111 15.23 13.1 0 KM Plot
LAML rs2005207 chr13:114928687 C/T 3.67E-5 110 13.2 19.33 2.55 KM Plot
LAML rs200580031 chr7:135653186 G/GAA 7.36E-5 111 13.15 28.93 0 KM Plot
LAML rs2007413 chr16:16308675 C/T 0.000128 110 17.23 10.65 0 KM Plot
LAML rs2011339 chr19:48245780 T/C 8.97E-7 106 5.1 22.37 14.18 KM Plot
LAML rs201543910 chr10:977551 CG/C 7.53E-5 110 15.23 16.7 5.1 KM Plot
LAML rs201831669 chr19:16241630 T/TTTTTTC 9.83E-5 108 16.2 7.13 0 KM Plot
LAML rs2018761 chr2:242433348 A/G 8.12E-5 109 1.53 14.63 17.23 KM Plot
LAML rs2019814 chr11:93168885 A/G 5.7E-5 110 6.13 12.65 16.3 KM Plot
LAML rs202001949 chr17:30559630 T/TC 0.000151 108 13.1 15.2 0 KM Plot
LAML rs2032882 chr19:16244817 C/T 6.07E-5 111 0 9.13 16.23 KM Plot
LAML rs2032883 chr19:16245104 A/G 7.61E-5 110 16.23 8.13 0 KM Plot
LAML rs2038378 chr6:127590400 C/T 2.29E-5 110 0.98 16.23 15.17 KM Plot